IGVFFI0909QGCD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0624REZE(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G8_P043_L007_R3

md5sum

a6672c102012a04777272dc3db87cc80

Content MD5sum

b8a388ecaf2a9451777850e50781b696

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_X043_G8_L008_P043_S34_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54722635

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9265WOCK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples