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IGVFFI0907CMNL

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2628PYOH(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
gary-hon:LW278_1_I2_2
md5sum
8a575a59e0849a3b36f1373d965826c2
Content MD5sum
23fde80e8076d622cfa62707f46a1eaf
File Size
995 MB
Submitted File Name
/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-10-02-McDermott-NextSeq.10X/2023-10-02/outs/fastq_path/AAC5W2WHV/LW278_S2_L001_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Gary Hon, UT

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AAC5W2WHV
Lane
1
Illumina Read Type
I2
Average Read Length
10
Read Count
181022575

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW278) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Files Derived From This File

2 items
hdf5
filtered feature barcode matrix
cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
448 MB
validated
pkl
raw feature barcode matrix
cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
395 MB
validated