IGVFFI0891FPMN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1296AIPR(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP006_G8_P055_L001_R1

md5sum

d7b8f6b13be6d94e39264479a067e336

Content MD5sum

d4361583fbd18702300530a55503d983

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_RP006_G8_L008_P055_S12_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50350353

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2981VRFX

Multiplexed Samples

cerebellar cortex, middle temporal gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples