IGVFFI0882YLIX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2990MLAQ(CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-BinB-PCRRep3_I1

md5sum

9f45b5e4b1a43d4a42a875695590cef3

Content MD5sum

1e9fc308012c339dc09c3cdc6b5ae197

File Size

1.8 MB

Submitted File Name

Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-PCRRep3-BinB_S70_I1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Illumina Read Type

Index

CAATAGTC:TTGT

Average Read Length

Read Count

215919

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM8345LMXC

InVitroSystem

Jurkat

Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of IL2RA) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library