IGVFFI0881IVIP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0948OFTV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X039_G1_P039_L003_R1

md5sum

0cf3c0989e11d005b05994e5011af361

Content MD5sum

eff28a140e8d5f2ceaedc9403c128dff

File Size

8.9 GB

Submitted File Name

Multiome_ATAC_X039_G1_L001_P039_S23_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

285284281

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3629YHDD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples