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INDEXED
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SequenceFile
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IGVFFI0879NPUS
IGVFFI0879NPUS
released
validated
Json view
File Set
IGVFDS9209XACN
(single-cell ATAC-seq (SHARE-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-APC-SHARE-02-more2-ATAC.barcode.fastq.gz
md5sum
cace4e3ea7037693ff3c91ec53861328
Content MD5sum
97251e4667eef08a8824f01ec63de624
File Size
7.2 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/barcode-file/APC-SHARE-02-more2-ATAC.barcode.fastq.gz
Checkfiles Version
v19
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
32
Read Count
425912425
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM6844DNNZ
Tissue
colon
Mus musculus C57BL/6J colon tissue
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7872VBWG
yaml
seqspec
seqspec of IGVFFI4354ROOZ, IGVFFI1350CWOS, IGVFFI0879NPUS
Jason Buenrostro, Broad
1.2 KB
validated