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INDEXED
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SequenceFile
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IGVFFI0863GHNX
IGVFFI0863GHNX
released
validated
Json view
File Set
IGVFDS8103FALC
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x1_NGS3_i1
md5sum
c7c949f0f3a241b5a624b44f0a2db60b
Content MD5sum
28e84e93abf16349e08cab5e8314d47f
File Size
909 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC1_S5_L003_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
130708539
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3641EGVH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7212WXZR
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.3 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6152BDFZ
yaml
seqspec
seqspec of IGVFFI0863GHNX, IGVFFI6543MNBG, IGVFFI3494LPTP, IGVFFI9211ZNLQ
Ansuman Satpathy, Stanford
1.4 KB
validated