IGVFFI0862KUHN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5459UKQP(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X038_G8_P039_L003_R1

md5sum

615552413dbea0f38b6436b530ce818a

Content MD5sum

dfea85bcc4c5d9eb2d4652991cfb02d7

File Size

5.3 GB

Submitted File Name

Multiome_ATAC_X038_G8_L008_P039_S22_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

172734224

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4050UUIC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples