IGVFFI0855XPGI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5398QLMU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X018_G2_P017_L001_R1

md5sum

d5e28739a77c152f601bd598bdef3426

Content MD5sum

270faa431f544fd7858a05a5b3e29329

File Size

7.4 GB

Submitted File Name

Multiome_ATAC_X018_G2_L002_P017_S4_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

241592246

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9798GLTM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples