IGVFFI0829YKTW

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI0829YKTW/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0829YKTW",
10    "aliases": [
11        "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_GEX_NGS_2_LAF7052A9_L004_R2"
12    ],
13    "assay_titles": [
14        "scRNA-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012041/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "7bbce05f266537a88fb83e517c2598dd",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-05T02:09:42.850073+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS5867EPVA/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5867EPVA",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM5472KWSO/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM5472KWSO",
50                "classifications": [
51                    "differentiated cell specimen",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/CL_0000236/",
59                        "status": "released",
60                        "term_name": "B cell"
61                    }
62                ],
63                "status": "preview",
64                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 12 more samples",
65                "taxa": "Homo sapiens",
66                "treatments": []
67            }
68        ],
69        "status": "preview",
70        "summary": "scRNA-seq"
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73    "gene_list_for": [],
74    "href": "/sequence-files/IGVFFI0829YKTW/@@download/IGVFFI0829YKTW.fastq.gz",
75    "illumina_read_type": "R2",
76    "input_file_for": [
77        "/matrix-files/IGVFFI3987VJYL/"
78    ],
79    "integrated_in": [],
80    "lab": {
81        "@id": "/labs/harinder-singh/",
82        "title": "Harinder Singh, University of Pittsburgh"
83    },
84    "lane": 4,
85    "loci_list_for": [],
86    "maximum_read_length": 90,
87    "md5sum": "0a166c7d26b5df8c033cf6039a8de580",
88    "mean_read_length": 90,
89    "minimum_read_length": 90,
90    "quality_metrics": [],
91    "read_count": 374283778,
92    "read_names": [
93        "Read 2"
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95    "s3_uri": "s3://igvf-restricted-files/2025/03/05/0c6bd95e-9fc0-45e3-acbb-fae75dbe109b/IGVFFI0829YKTW.fastq.gz",
96    "schema_version": "15",
97    "seqspecs": [],
98    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
99    "sequencing_platform": {
100        "@id": "/platform-terms/EFO_0008637/",
101        "status": "released",
102        "term_name": "Illumina NovaSeq 6000"
103    },
104    "sequencing_run": 2,
105    "status": "preview",
106    "submitted_by": {
107        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
108        "title": "Nicholas Pease"
109    },
110    "submitted_file_name": "/ix/djishnu/Common_Folder/Pease_Data/20240318_PerturbSeq_2/Singh_021224_2_Pool_5Pv2_GEX_LAF7052A9_S2_L004_R2_001.fastq.gz",
111    "summary": "R2 reads from sequencing run 2",
112    "upload_status": "validated",
113    "uuid": "0c6bd95e-9fc0-45e3-acbb-fae75dbe109b"
114}