IGVFFI0829SUML

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8666KHZN(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G2_P059_L007_I1

md5sum

91292169f6d75d86a5dd388831ab50ae

Content MD5sum

fc96be5b3e8fc964f12ef6699b2d6a46

File Size

507 MB

Submitted File Name

Multiome_ATAC_RP011_G2_L002_P059_S74_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

71985822

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9347ZBKI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples