IGVFFI0823FVLU

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI0823FVLU/",
    "@type": [
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        "Item"
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    "accession": "IGVFFI0823FVLU",
    "aliases": [
        "chongyuan-luo:pgp_snm3c_C39_day0_L8_R2"
    ],
    "assay_titles": [
        "snM3C-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012079/",
        "component": "networks"
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    "content_md5sum": "fd296d74c98ad8c9b06f4d709884c7c7",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-11-17T12:46:02.732387+00:00",
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    "file_set": {
        "@id": "/measurement-sets/IGVFDS8729LTAJ/",
        "accession": "IGVFDS8729LTAJ",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM8158AYJT/",
                "accession": "IGVFSM8158AYJT",
                "classifications": [
                    "cell line"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000057/",
                        "status": "released",
                        "term_name": "fibroblast"
                    }
                ],
                "status": "released",
                "summary": "fibroblast cell line, Homo sapiens",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "snM3C-seq"
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    "href": "/sequence-files/IGVFFI0823FVLU/@@download/IGVFFI0823FVLU.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/chongyuan-luo/",
        "title": "Chongyuan Luo, UCLA"
    },
    "lane": 8,
    "loci_list_for": [],
    "maximum_read_length": 151,
    "md5sum": "25131a7feb3f0f2d2f51022cfb5e1d1a",
    "mean_read_length": 148.82,
    "minimum_read_length": 35,
    "quality_metrics": [],
    "read_count": 44633959,
    "read_names": [
        "Read 2"
    ],
    "release_timestamp": "2025-02-11T00:53:54.611652+00:00",
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    "seqspecs": [],
    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0022840/",
        "status": "released",
        "term_name": "Illumina NovaSeq X"
    },
    "sequencing_run": 2,
    "status": "released",
    "submitted_by": {
        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
        "title": "Terence Li"
    },
    "submitted_file_name": "/home/ec2-user/igvf/submit/fastq/year2/snm3c/yzcl47/20231005-3C39D0-Pos1-C06_S27_L008_R2_001.fastq.gz",
    "submitter_comment": "Changed from Novaseq 6000 to Novaseq X on 20250224",
    "summary": "R2 reads from sequencing run 2",
    "upload_status": "validated",
    "uuid": "22ab5963-ddbb-431f-8589-1866de8d19f5"
}