IGVFFI0821AVRA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1183UPFU(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G7_P043_L005_I1

md5sum

10927fdb039829e59789ef937ef743ed

Content MD5sum

5f4ee2d13752350f5392b9b33ca707d7

File Size

547 MB

Submitted File Name

Multiome_ATAC_X043_G7_L007_P043_S33_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

74197942

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2344WXDM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples