IGVFFI0800JAPD

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI0800JAPD/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI0800JAPD",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_md5sum": "edf57ccb9ec435a59da83eefa29e9058",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-08-25T20:27:57.356319+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS2553TFCV/",
        "accession": "IGVFDS2553TFCV",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM1955RVUC/",
                "accession": "IGVFSM1955RVUC",
                "classifications": [
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq"
    },
    "file_size": 11645547818,
    "flowcell_id": "AAC2L2NHV",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI0800JAPD/@@download/IGVFFI0800JAPD.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/matrix-files/IGVFFI3984YVBB/",
        "/matrix-files/IGVFFI3511NJOR/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 140,
    "md5sum": "243fb7c21baeedd32453c2f6c395eb9c",
    "mean_read_length": 140,
    "minimum_read_length": 140,
    "read_count": 148879092,
    "release_timestamp": "2024-05-08T23:38:37.944969+00:00",
    "s3_uri": "s3://igvf-files/2023/08/25/52b2b0c5-e89a-40dc-b705-36c10e49c304/IGVFFI0800JAPD.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI5228SMZU/"
    ],
    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0010963/",
        "status": "released",
        "term_name": "Illumina NextSeq 2000"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "igvf_b01/next1/igvf_b01_B02_D_next_N1_R1.fastq.gz",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "52b2b0c5-e89a-40dc-b705-36c10e49c304"
}