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INDEXED
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SequenceFile
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IGVFFI0796NFCJ
IGVFFI0796NFCJ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8208AXYC
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X029_G5_P030_L002_I2
md5sum
cc45abb80037137535d029f8243c27f8
Content MD5sum
feaf537dd34550bc80a5a88c8576e75d
File Size
1.3 GB
Submitted File Name
Multiome_RNA_X029_G5_L005_P030_S17_L002_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HV7VHDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I2
Average Read Length
10
Read Count
176089626
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2386YVCC
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples