IGVFFI0790CJXN

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI0790CJXN/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI0790CJXN",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_md5sum": "d644b2ce6af951d0c80b01a43a26a0de",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-08-25T22:57:36.900704+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS4330PMAC/",
        "accession": "IGVFDS4330PMAC",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM6958ESMJ/",
                "accession": "IGVFSM6958ESMJ",
                "classifications": [
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq"
    },
    "file_size": 6339847985,
    "flowcell_id": "AAC2JNKHV",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI0790CJXN/@@download/IGVFFI0790CJXN.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/matrix-files/IGVFFI3686NNKA/",
        "/matrix-files/IGVFFI0750SOUQ/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 86,
    "md5sum": "86a138cfc8b2a3a0ab4dbf615fb6711b",
    "mean_read_length": 86,
    "minimum_read_length": 86,
    "read_count": 142880513,
    "release_timestamp": "2024-05-08T23:38:40.498792+00:00",
    "s3_uri": "s3://igvf-files/2023/08/25/dd51eb86-7ad7-433d-840d-74a225ecb90d/IGVFFI0790CJXN.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI6760GSUG/"
    ],
    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0010963/",
        "status": "released",
        "term_name": "Illumina NextSeq 2000"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "igvf_b01/next2/igvf_b01_B05_D_next_N2_R2.fastq.gz",
    "summary": "R2 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "dd51eb86-7ad7-433d-840d-74a225ecb90d"
}