IGVFFI0781BIER

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1841XXQV(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G5_P045_L001_R3

md5sum

7ea8247d1a0e044ad427a0e6cf3f0501

Content MD5sum

71f47ee706ec92a61b76215a30f8fcfe

File Size

8.2 GB

Submitted File Name

Multiome_ATAC_X044_G5_L005_P045_S1_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

261393301

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1837EZTB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples