{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI0767OCUM/",
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"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI0767OCUM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep2-BinB-PCRrep7_R2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released sequence file [IGVFFI0767OCUM](/sequence-files/IGVFFI0767OCUM/) has in progress subobject auxiliary set [IGVFDS4967IZZB](/auxiliary-sets/IGVFDS4967IZZB/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/sequence-files/IGVFFI0767OCUM/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "6e94e14c76ca5ef7b94752f79a7f2b9e",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:45:51.781674+00:00",
"file_format": "fastq",
"file_set": "/auxiliary-sets/IGVFDS4967IZZB/",
"file_size": 9526877,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI0767OCUM/@@download/IGVFFI0767OCUM.fastq.gz",
"illumina_read_type": "R2",
"index": "CAGCGGTA:CAGT",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 150,
"md5sum": "eea46ddeb7b82967e2dc384cbeb1c891",
"mean_read_length": 150,
"minimum_read_length": 150,
"read_count": 231468,
"release_timestamp": "2023-12-21T00:54:31.331584+00:00",
"s3_uri": "s3://igvf-files/2023/12/13/e2418c5f-24b5-4549-85e5-e0ba95d4d119/IGVFFI0767OCUM.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": "/platform-terms/EFO_0008566/",
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep2_BinB-PCRrep7_S67_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "e2418c5f-24b5-4549-85e5-e0ba95d4d119"
}