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IGVFFI0765RDEL

released
validated
File Set
IGVFDS9875NBZW(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp16_rna_10x2_NGS1_r2
md5sum
3de7058d7eb5e31331d4e056e6d9ab12
Content MD5sum
594bbfe1c4535d4bb1acf465709d4427
File Size
10 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX2_S8_L003_R2_001.fastq.gz
Checkfiles Version
v14

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NCFCLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
253842725

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
225 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8195YWLT, IGVFFI0765RDEL, IGVFFI6209GSWP, IGVFFI6922CLIB
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford