IGVFFI0765OXRF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7477IHEZ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G5_P057_L002_R1

md5sum

0cd7f479710f615aa0a2e110a1cc1527

Content MD5sum

87004fdc4d63300e599d26614fcf028c

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_RP009_G5_L005_P057_S13_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

48092086

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3999SNMB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples