IGVFFI0758CZQA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0028AWOA(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G7_P061_L001_I1

md5sum

153bcfc39f7e5f9043d8f63b9458bca5

Content MD5sum

5a621ccda709c8330c29fdc151568119

File Size

454 MB

Submitted File Name

Multiome_ATAC_RP013_G7_L007_P061_S7_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60010899

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7012MRMQ

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples