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INDEXED
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SequenceFile
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IGVFFI0750IULW
IGVFFI0750IULW
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS1853NUVR
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X012_G3_P010_L002_I2
md5sum
52c818b1562d768e32b10d3109d8d69f
Content MD5sum
d6bbf3d72f220bf175754cc754a9e3d6
File Size
1.2 GB
Submitted File Name
Multiome_RNA_X012_G3_L003_P010_S13_L002_I2_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HJ7TNDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I2
Average Read Length
10
Read Count
172408601
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4418HKGN
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF