IGVFFI0726ZIFT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2974GKCU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G1_P043_L007_R1

md5sum

100070f64a08f567819bf5693cd97393

Content MD5sum

e3cf0d1a90346b1eb5832edbab46605b

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_X043_G1_L001_P043_S27_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

66113396

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7715ZYTK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples