IGVFFI0725BBSI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6822SLYX(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X017_G6_P016_L004_R2

md5sum

4931c62c289bd00e64dcb317e7714a5e

Content MD5sum

cf6df83dc0919770655f0b36fe208d92

File Size

11 GB

Submitted File Name

Multiome_RNA_X017_G6_L006_P016_S14_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

232600978

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7930LHEX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples