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IGVFFI0716KABP

released
validated
File Set
IGVFDS8645IDXO(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 171
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_171_R1
bradley-bernstein:SS-LS_2106_R1
buenrostro-bernstein:SS-LS_171_R1
buenrostro-bernstein:SS-LS_2106_R1
md5sum
9865e10e54c039ff5a4976d8ad4a3721
Content MD5sum
d98e5da4533144233264caca8a96596e
File Size
1.1 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-188_L2_SS-PKR-131_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
171
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
37978972

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
6.3 GB
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
887 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0716KABP, IGVFFI2873EEMS
Jason Buenrostro, Broad
1.2 KB
validated