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IGVFFI0707UFPZ

released
validated
File Set
IGVFDS3977WBMS(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 5380
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:SS-LS_5380_R2
md5sum
b20cb3ed44128b644db1f419a9b57650
Content MD5sum
88cdba8276e2ba170195f7b676df04a3
File Size
15 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-1589_L5_SS-PKR-433_2022-APRIL-R1-SET-OF-192_R2.fastq.gz
Checkfiles Version
v17
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
5380
Flowcell ID
22KHF5LT3
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
199
Read Count
198535063

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 433)

Files Derived From This File

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
1.2 GB
validated
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
7.7 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4877DKZW, IGVFFI0707UFPZ
Jason Buenrostro, Broad
1.3 KB
validated