IGVFFI0707EDTL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5144SCSL(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G1_P055_L004_R1

md5sum

b20a538af1d8673cc2431455b1114f79

Content MD5sum

cd2f6a8d25ee1f85093f2d38dbeea8d2

File Size

2.2 GB

Submitted File Name

Multiome_ATAC_RP007_G1_L001_P055_S13_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

74188492

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3050FUJW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples