IGVFFI0699SRNY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4454OQTQ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G7_P041_L001_R2

md5sum

5453997b22aeff3dbe7e0846ceb3fe4f

Content MD5sum

9c0b6253d228306e98774ffa0392ba93

File Size

948 MB

Submitted File Name

Multiome_ATAC_X041_G7_L007_P041_S17_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55053565

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8345ETIT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples