IGVFFI0663CJUP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9330PDLC(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X028_G1_P028_L004_R1

md5sum

3a124f390b8c2d008a38f53dbf9b9dfb

Content MD5sum

2683031a32dcb77f1cf0eb2758de8143

File Size

4.8 GB

Submitted File Name

Multiome_RNA_X028_G1_L001_P028_S18_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

228218043

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6259JSXN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples