IGVFFI0662XBCQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0299PZQV(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP006_G7_P055_L001_R2

md5sum

0f145927ad8262209e8c34552d4484bf

Content MD5sum

b3f0b4766511180190bd0cdd101378c2

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP006_G7_L007_P055_S11_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

66380000

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6003RYZR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples