IGVFFI0662PQVB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1916OYNE(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X031_G3_P031_L001_R1

md5sum

9173c5923a0256318d94b9cf2d4edbe9

Content MD5sum

4d7ccf55e1829abb25bc4185cb942083

File Size

8.5 GB

Submitted File Name

Multiome_ATAC_X031_G3_L003_P031_S9_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

161873958

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8532DSVV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples