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INDEXED
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SequenceFile
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IGVFFI0654VNDK
IGVFFI0654VNDK
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5753AZXN
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X056_G2_P074_L003_R1
md5sum
80e306ffe4337f178f98615a9a38151a
Content MD5sum
15a414513c83eb7c7b66335cf642efa0
File Size
16 GB
Submitted File Name
Multiome_RNA_X056_G2_L002_P074_S30_L003_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19UBCA4LE
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
151
Read Count
188276889
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1116BOZN
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples