IGVFFI0650EQMC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0429DNNI(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X023_G1_P021_L001_R2

md5sum

f2cbbfc74704b0798eeb98b50b288233

Content MD5sum

10552040d6fa8bc5b2d0b1688e25b3a3

File Size

3.4 GB

Submitted File Name

Multiome_ATAC_X023_G1_L001_P021_S7_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

200417607

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9860TATP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 75 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples