IGVFFI0649XWFJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6707ABHS(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G8_P059_L005_I1

md5sum

be03866b15ccb62bc402e75d1947b017

Content MD5sum

c845c0a4f7a547286bae9da7477c7182

File Size

357 MB

Submitted File Name

Multiome_ATAC_RP010_G8_L008_P059_S72_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

49914242

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6509YCTF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples