IGVFFI0639RXMB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5243SNGA(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X024_G2_P024_L004_R2

md5sum

608c465517ed98de1559882715bcda16

Content MD5sum

b4ded67f3f2edf7f7b42b7de559172f4

File Size

14 GB

Submitted File Name

Multiome_RNA_X024_G2_L002_P024_S40_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

265588245

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4247PWXS

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples