IGVFFI0638MBHC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7235JXKZ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP012_G3_P060_L007_I2

md5sum

75c49d70efcc9059b27f7cdb6fa54f68

Content MD5sum

8eadfcf221dd5d615998de9a2299d441

File Size

333 MB

Submitted File Name

Multiome_RNA_RP012_G3_L003_P060_S35_L007_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58794270

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9610QWFB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples