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INDEXED
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SequenceFile
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IGVFFI0637DIQC
IGVFFI0637DIQC
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2462EACJ
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X027_G1_P026_L002_I1
md5sum
1c36753a18657f5da7bcb579c7baa429
Content MD5sum
50e8d42f783d69845cd2a3ae8c8be6ed
File Size
1.4 GB
Submitted File Name
Multiome_RNA_X027_G1_L001_P026_S10_L002_I1_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HV737DSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
10
Read Count
236412386
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2801FMBF
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF