IGVFFI0634XUDJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7055SHHA(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G8_P061_L001_R1

md5sum

6353f530893e8054faf7164023b05373

Content MD5sum

cc6b5728d5a40f08d3fc6fc34a528b05

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP013_G8_L008_P061_S8_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56527890

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7640TBFV

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples