IGVFFI0629SWFB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1451RVGA(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP015_G3_P061_L001_R2

md5sum

f5bef6c5f9e10d3ac34e2bc927014137

Content MD5sum

62ec71609a8db1c5115fc3a6dc532cfd

File Size

794 MB

Submitted File Name

Multiome_ATAC_RP015_G3_L003_P061_S19_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

44831135

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0903NROD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples