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INDEXED
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SequenceFile
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IGVFFI0628LHUX
IGVFFI0628LHUX
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9670KNNR
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP015_G2_P062_L006_I1
md5sum
70e0fce9fccf975f58a3422f7cc8ae80
Content MD5sum
578cdb83d167ab465329b18a87396b78
File Size
562 MB
Submitted File Name
Multiome_RNA_RP015_G2_L002_P062_S38_L006_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223H55LT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
81294113
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3324TBYQ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples