IGVFFI0627HCCH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2109BZLJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X036_G2_P035_L003_R1

md5sum

908e8aafe7ace4a14f6db13ddfd5df9b

Content MD5sum

a9e7e22e72828df9345dd72add5744d7

File Size

11 GB

Submitted File Name

Multiome_ATAC_X036_G2_L002_P035_S42_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

200958862

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2877SEAA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples