IGVFFI0621SJTS

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI0621SJTS/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI0621SJTS",
    "aliases": [
        "jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinD-PCRrep9_R2"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released sequence file [IGVFFI0621SJTS](/sequence-files/IGVFFI0621SJTS/) has in progress subobject auxiliary set [IGVFDS7512GSQC](/auxiliary-sets/IGVFDS7512GSQC/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/sequence-files/IGVFFI0621SJTS/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "content_md5sum": "3c89600fe567874fb0da8cdb679959bd",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-13T14:57:51.804504+00:00",
    "file_format": "fastq",
    "file_set": "/auxiliary-sets/IGVFDS7512GSQC/",
    "file_size": 11501171,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI0621SJTS/@@download/IGVFFI0621SJTS.fastq.gz",
    "illumina_read_type": "R2",
    "index": "TTGTCTAT:TGAC",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "loci_list_for": [],
    "maximum_read_length": 150,
    "md5sum": "1df717b7cd35a38fe39faef6db673bcf",
    "mean_read_length": 150,
    "minimum_read_length": 150,
    "read_count": 242788,
    "release_timestamp": "2023-12-21T00:59:53.172107+00:00",
    "s3_uri": "s3://igvf-files/2023/12/13/0befb60e-0abd-491a-8e6c-0052b150abca/IGVFFI0621SJTS.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_platform": "/platform-terms/EFO_0008566/",
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
        "title": "Michael Montgomery"
    },
    "submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep4_BinD-PCRrep9_S381_R2_001.fastq.gz",
    "summary": "R2 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "0befb60e-0abd-491a-8e6c-0052b150abca"
}