IGVFFI0619VLYW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3636ZYTF(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G7_P042_L002_R2

md5sum

36085900ea8d29d954a05f3d8b113329

Content MD5sum

3b851c08a97452898bac972bc1d906ba

File Size

2.6 GB

Submitted File Name

Multiome_RNA_X041_G7_L007_P042_S17_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

62549478

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8345ETIT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples