IGVFFI0616SDBH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6561ZEIK(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G3_P057_L004_R1

md5sum

f8227b2395e2b88fb53a36b13b77a4d4

Content MD5sum

43e4131daf6af6d075c8ba6bf03ad2a4

File Size

14 GB

Submitted File Name

Multiome_ATAC_RP009_G3_L003_P057_S11_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

463444100

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6201VKVB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples