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IGVFFI0609QFGE

released
validated
File Set
IGVFDS8723ZVCO(CRISPR base editing FlowFISH screen sorted on the expression of NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
guillaume-lettre:BP_screen_ABE8_L_R3_1_read1
md5sum
cdd3e8819978386032bce81368116611
Content MD5sum
e9d59d0a2c970d4a63b5b162e8758d5b
File Size
1.1 GB
Submitted File Name
/home/lokensin/projects/rrg-glettre/sequencing_datastore/raw_data/BE_IGVF_20230720/samples/NS.X0070.001.IndexR1_30.L_R3_1_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Guillaume Lettre, MHI

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 SP Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
151
Read Count
24519806

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
guide quantifications
guide quantifications
Guillaume Lettre, MHI
425 KB
validated