IGVFFI0606STTU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9379ZJGH(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP015_G1_P061_L001_R1

md5sum

863a504121a61c6bda99bd5a68412fbe

Content MD5sum

bac8b0d2ce6ad0b00adbd613f3783a2c

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP015_G1_L001_P061_S17_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

49841273

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1969WJDB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples