IGVFFI0601DWJE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1405WAMN(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X016_G8_P015_L003_R2

md5sum

283ee0b9f157962c1b340aadd8378c30

Content MD5sum

94498562c94383b5d273804656b1afdb

File Size

3.1 GB

Submitted File Name

Multiome_ATAC_X016_G8_L008_P015_S22_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

178720070

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7655LNJB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples