IGVFFI0596HNME

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5290TNAA(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X051_G5_P069_L003_R1

md5sum

30355c25bbb7fd6de2c4f95ec582e643

Content MD5sum

7a211ecb6a0fe48e5930387c006e4f8c

File Size

9.6 GB

Submitted File Name

Multiome_ATAC_X051_G5_L005_P069_S13_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

137211045

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9951NZWB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples