IGVFFI0587WJEM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7541UESD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G5_P043_L008_R3

md5sum

ea1988aee1e15df610199e74844dc6d4

Content MD5sum

9ace1933efb508c347066eecd529bde6

File Size

2.3 GB

Submitted File Name

Multiome_ATAC_X043_G5_L005_P043_S31_L008_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

76364926

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7586ZAET

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples