IGVFFI0581ZDYF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4083ZJQF(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X016_G6_P016_L004_R2

md5sum

e6510c6edce2e6e53306f3858434c5ad

Content MD5sum

25efbe52d6de6b5bd9ee72f8fc64e3aa

File Size

12 GB

Submitted File Name

Multiome_RNA_X016_G6_L014_P016_S6_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

250071383

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1822WDRK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples